WormBase Tree Display for Variation: WBVar00003594

WBVar00003594 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003594
    Other_name: cbs3421
      cb3421 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: aggaaatcatcaagttcaatcctaa tttggaaaactcccgcctaaatgct
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 601 208 112 79
        RAATTY AcsI, ApoI, XapI 378 152 124 118 115 79 20 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 937 63
        TCGCGA Bsp68I, NruI 713 287
        GAATTC EcoRI, FunII 620 380
        TCNNGA Hpy178III, Hpy188III 269 248 167 161 84 36 35
        CAATTG MfeI, MunI 636 364
        AATT Sse9I, TasI, Tsp509I, TspEI 139 118 104 90 87 84 64 58 54 45 21 21 20 18 14 14 13 13 10 7 6
      Polymorphic_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 354 247 208 112 79
        RAATTY AcsI, ApoI, XapI 378 242 152 115 79 20 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 556 381 63
        TCGCGA Bsp68I, NruI 359 354 287
        GAATTC EcoRI, FunII 1000
        TCNNGA Hpy178III, Hpy188III 354 167 163 161 84 36 35
        CAATTG MfeI, MunI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 208 139 104 87 84 64 59 58 54 21 21 20 18 14 13 13 10 7 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP