WormBase Tree Display for Variation: WBVar00003599

WBVar00003599 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003599
    Other_name: cbs3422
      cb3422 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: gagaggaaatcatcaagttcaatcc aaatttggaaaactcccgcctaaat
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 601 208 109 82
        RAATTY AcsI, ApoI, XapI 18 79 20 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 940 60
        TCGCGA Bsp68I, NruI 710 290
        GAATTC EcoRI, FunII 617 383
        TCNNGA Hpy178III, Hpy188III 269 248 167 158 84 38 36
        CAATTG MfeI, MunI 639 361
        AATT Sse9I, TasI, Tsp509I, TspEI 139 118 104 90 90 84 64 58 54 45 21 21 20 18 14 14 13 10 10 7 6
      Polymorphic_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 354 247 208 109 82
        RAATTY AcsI, ApoI, XapI 375 242 152 118 79 20 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 559 381 60
        TCGCGA Bsp68I, NruI 356 354 290
        GAATTC EcoRI, FunII 1000
        TCNNGA Hpy178III, Hpy188III 354 167 163 158 84 38 36
        CAATTG MfeI, MunI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 208 139 104 90 84 64 59 58 54 21 21 20 18 14 13 10 10 7 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP