WormBase Tree Display for Variation: WBVar00003763
expand all nodes | collapse all nodes | view schema
WBVar00003763 | Name | Public_name | WBVar00003763 | ||
---|---|---|---|---|---|
Other_name | haw31875 | ||||
haw135240 | |||||
cewivar00187720 | |||||
F42G4.3c.1:c.427+1111C>A | |||||
F42G4.3d.1:c.151+1111C>A | |||||
F42G4.3a.1:c.1225+1111C>A | |||||
F42G4.3e.1:c.1225+1111C>A | |||||
HGVSg | CHROMOSOME_II:g.13066189C>A | ||||
Sequence_details | SMap | S_parent | Sequence | F42G4 | |
Flanking_sequences | ataggttgacctttttggattttta | aaacttggcaaaacttgataatttt | |||
Mapping_target | F42G4 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01380788 | |||
WBVar00555105 | |||||
Status | Live | ||||
Affects | Gene | WBGene00006999 | |||
Transcript | F42G4.3e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F42G4.3e.1:c.1225+1111C>A | ||||
Intron_number | 6/9 | ||||
F42G4.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42G4.3d.1:c.151+1111C>A | ||||
Intron_number | 1/4 | ||||
F42G4.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42G4.3c.1:c.427+1111C>A | ||||
Intron_number | 2/5 | ||||
F42G4.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42G4.3a.1:c.1225+1111C>A | ||||
Intron_number | 6/10 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw31875 | ||||
Method | WGS_Hawaiian_Waterston |