WormBase Tree Display for Variation: WBVar00003998
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| WBVar00003998 | Name | Public_name | WBVar00003998 | ||
|---|---|---|---|---|---|
| Other_name | snp_F29C12[1] | ||||
| haw31922 | |||||
| haw135275 | |||||
| cewivar00187741 | |||||
| F29C12.3b.1:c.3740+56G>A | |||||
| F29C12.3c.1:c.1304+56G>A | |||||
| F29C12.3a.1:c.3734+56G>A | |||||
| HGVSg | CHROMOSOME_II:g.13102654C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F29C12 | |
| Flanking_sequences | ttttcgtttttttgtgtgatatttc | aaatttcagacaatttttgaatgtt | |||
| Mapping_target | F29C12 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00555140 | |||
| WBVar01249312 | |||||
| WBVar00244462 | |||||
| WBVar01380864 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00009245 | |||
| Transcript | F29C12.3b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F29C12.3b.1:c.3740+56G>A | ||||
| Intron_number | 13/17 | ||||
| F29C12.3c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F29C12.3c.1:c.1304+56G>A | ||||
| Intron_number | 3/6 | ||||
| F29C12.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F29C12.3a.1:c.3734+56G>A | ||||
| Intron_number | 13/17 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw31922 | ||||
| Method | WGS_Hawaiian_Waterston |
