WormBase Tree Display for Variation: WBVar00004220
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| WBVar00004220 | Name | Public_name | WBVar00004220 | ||
|---|---|---|---|---|---|
| Other_name | uCE5-1870 | ||||
| haw81942 | |||||
| haw169615 | |||||
| cewivar00241518 | |||||
| T02E9.5.2:c.355+505G>T | |||||
| T02E9.9:n.114C>A | |||||
| T02E9.5.1:c.355+505G>T | |||||
| HGVSg | CHROMOSOME_V:g.11343281G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T02E9 | |
| Flanking_sequences | tttgatatttgcacaatagtataga | gagcaccggaaggaatacgaaggga | |||
| Mapping_target | T02E9 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00589480 | |||
| WBVar00272485 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00195338 | |||
| WBGene00011383 | |||||
| Transcript | T02E9.5.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02E9.5.2:c.355+505G>T | ||||
| Intron_number | 3/4 | ||||
| T02E9.9 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02E9.9:n.114C>A | ||||
| cDNA_position | 114 | ||||
| Exon_number | 1/1 | ||||
| T02E9.5.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02E9.5.1:c.355+505G>T | ||||
| Intron_number | 3/5 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw81942 | ||||
| Method | WGS_Hawaiian_Waterston |
