WormBase Tree Display for Variation: WBVar00005388

WBVar00005388 Evidence: Paper_evidence: WBPaper00037807
  Name: Public_name: WBVar00005388
    Other_name: pas42862
      haw32200
      cewivar00097955
      Y48C3A.5d.1:c.6+2636T>A
      Y48C3A.5b.1:c.141+943T>A
      Y48C3A.5a.1:c.141+943T>A
    HGVSg: CHROMOSOME_II:g.13273717T>A
  Sequence_details: SMap: S_parent: Sequence: Y48C3A
    Flanking_sequences: tagtcgacaggattttcgttttttt aagttttttttttctaaaataaatt
    Mapping_target: Y48C3A
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (29)
    Laboratory: RW
      AX
    Person: WBPerson1562
      WBPerson6900
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      Million_mutation_project_reanalysis
      WGS_Pasadena_Quinlan
    History: Acquires_merge: WBVar01249737
        WBVar01316312
        WBVar00231086
    Status: Live
  Affects: Gene: WBGene00012989
    Transcript: Y48C3A.5d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5d.1:c.6+2636T>A
        Intron_number: 1/9
      Y48C3A.5b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5b.1:c.141+943T>A
        Intron_number: 1/11
      Y48C3A.5a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5a.1:c.141+943T>A
        Intron_number: 1/10
  Reference: WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw32200
  Method: WGS_Hawaiian_Waterston