WormBase Tree Display for Variation: WBVar00005528
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WBVar00005528 | Name | Public_name | WBVar00005528 | ||
---|---|---|---|---|---|
Other_name | haw32228 | ||||
haw135516 | |||||
cewivar00187915 | |||||
Y48C3A.4b.1:c.93+517C>A | |||||
Y48C3A.5d.1:c.504+5414G>T | |||||
Y48C3A.5a.1:c.639+5414G>T | |||||
Y48C3A.4a.1:c.84+517C>A | |||||
Y48C3A.5b.1:c.639+5414G>T | |||||
HGVSg | CHROMOSOME_II:g.13285182G>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y48C3A | |
Flanking_sequences | gtgcctaccatatctaaagcatttt | ctcaactttggcgacttatatctcg | |||
Mapping_target | Y48C3A | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00555381 | |||
WBVar01381380 | |||||
Status | Live | ||||
Affects | Gene | WBGene00012989 | |||
WBGene00012988 | |||||
Transcript | Y48C3A.5d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.5d.1:c.504+5414G>T | ||||
Intron_number | 4/9 | ||||
Y48C3A.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.4b.1:c.93+517C>A | ||||
Intron_number | 2/6 | ||||
Y48C3A.5b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.5b.1:c.639+5414G>T | ||||
Intron_number | 4/11 | ||||
Y48C3A.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.5a.1:c.639+5414G>T | ||||
Intron_number | 4/10 | ||||
Y48C3A.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.4a.1:c.84+517C>A | ||||
Intron_number | 2/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw32228 | ||||
Method | WGS_Hawaiian_Waterston |