WormBase Tree Display for Variation: WBVar00005583

WBVar00005583 Evidence: Paper_evidence: WBPaper00037807
  Name: Public_name: WBVar00005583
    Other_name: pas42887
      haw32239
      cewivar00098017
      Y48C3A.5b.1:c.640-7072A>T
      Y48C3A.5d.1:c.505-7072A>T
      Y48C3A.5a.1:c.640-7072A>T
    HGVSg: CHROMOSOME_II:g.13292624A>T
  Sequence_details: SMap: S_parent: Sequence: Y48C3A
    Flanking_sequences: gagatatacggtttcgaagtaaacg gggaagtttacttcggtagcttacc
    Mapping_target: Y48C3A
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (34)
    Laboratory: RW
      AX
    Person: WBPerson1562
      WBPerson6900
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      Million_mutation_project_reanalysis
      WGS_Pasadena_Quinlan
    History: Acquires_merge: WBVar01381398
        WBVar00231111
        WBVar01249812
        WBVar01316397
    Status: Live
  Affects: Gene: WBGene00012989
    Transcript: Y48C3A.5d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5d.1:c.505-7072A>T
        Intron_number: 4/9
      Y48C3A.5b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5b.1:c.640-7072A>T
        Intron_number: 4/11
      Y48C3A.5a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5a.1:c.640-7072A>T
        Intron_number: 4/10
  Reference: WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw32239
  Method: WGS_Hawaiian_Waterston