WormBase Tree Display for Variation: WBVar00005603

WBVar00005603 Evidence: Paper_evidence: WBPaper00037807
  Name: Public_name: WBVar00005603
    Other_name: pas42898
      haw32243
      cewivar00098032
      Y48C3A.5b.1:c.640-113T>C
      Y48C3A.5d.1:c.505-113T>C
      Y48C3A.5a.1:c.640-113T>C
    HGVSg: CHROMOSOME_II:g.13299583T>C
  Sequence_details: SMap: S_parent: Sequence: Y48C3A
    Flanking_sequences: gtttctcgcgctttcaattaacatt aggaaaactgataagaaaatgcttc
    Mapping_target: Y48C3A
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (34)
    Laboratory: RW
      AX
    Person: WBPerson1562
      WBPerson6900
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      Million_mutation_project_reanalysis
      WGS_Pasadena_Quinlan
    History: Acquires_merge: WBVar01381406
        WBVar01249822
        WBVar01316408
        WBVar00231122
    Status: Live
  Affects: Gene: WBGene00012989
    Transcript: Y48C3A.5d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5d.1:c.505-113T>C
        Intron_number: 4/9
      Y48C3A.5b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5b.1:c.640-113T>C
        Intron_number: 4/11
      Y48C3A.5a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5a.1:c.640-113T>C
        Intron_number: 4/10
  Reference: WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw32243
  Method: WGS_Hawaiian_Waterston