WormBase Tree Display for Variation: WBVar00012840
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WBVar00012840 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00012840 | |||
Other_name | haw83666 | ||||
haw170666 | |||||
cewivar00243567 | |||||
C56A3.3b.1:c.144-8T>C | |||||
C56A3.3a.1:c.90-8T>C | |||||
C56A3.3d.1:c.144-8T>C | |||||
HGVSg | CHROMOSOME_V:g.13534089A>G | ||||
Sequence_details | SMap | S_parent | Sequence | C56A3 | |
Flanking_sequences | atcgtcaggtagttggccctgaaaa | gtgattttcagagttttatttggag | |||
Mapping_target | C56A3 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00590531 | |||
Status | Live | ||||
Affects | Gene | WBGene00008342 | |||
Transcript | C56A3.3a.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | C56A3.3a.1:c.90-8T>C | ||||
Intron_number | 3/11 | ||||
C56A3.3d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | C56A3.3d.1:c.144-8T>C | ||||
Intron_number | 2/10 | ||||
C56A3.3b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | C56A3.3b.1:c.144-8T>C | ||||
Intron_number | 2/9 | ||||
Reference | WBPaper00038208 | ||||
Remark | [20081124 db] this Variation was previously named hw83666 | ||||
Method | WGS_Hawaiian_Waterston |