WormBase Tree Display for Variation: WBVar00014754

WBVar00014754 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00014754
    Other_name: cbs13576
      cb13576 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.6485050T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2220b
    Flanking_sequences: agaatcctagaaacgtcaagtccac gacatcctgacctttttgaaaaatt
    Mapping_target: cb25.fpc2220b
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 234 167 164 124 105 76 66 64
        GTAC AfaI, Csp6I, RsaI 364 346 137 79 74
        TGCA CviRI, HpyCH4V 840 160
        GTNNAC Hpy8I 492 328 105 75
        AATT Sse9I, TasI, Tsp509I, TspEI 167 164 108 106 105 85 66 64 61 43 15 11 5
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 234 167 164 124 90 76 66 41 23 15
        GTAC AfaI, Csp6I, RsaI 364 346 137 79 60 14
        TGCA CviRI, HpyCH4V 508 332 160
        GTNNAC Hpy8I 492 328 105 59 16
        AATT Sse9I, TasI, Tsp509I, TspEI 167 164 108 106 90 85 66 61 43 41 23 15 15 11 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031034
    Transcript: CBG09456.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09456.1:c.-24+1543A>G
        Intron_number: 1/15
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP