WormBase Tree Display for Variation: WBVar00014759

WBVar00014759 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00014759
    Other_name: cbs13577
      cb13577 Paper_evidence: WBPaper00055507
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2220b
    Flanking_sequences: aatcctagaaacgtcaagtccacag catcctgacctttttgaaaaatttc
    Mapping_target: cb25.fpc2220b
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 236 167 164 122 105 76 66 64
        GTAC AfaI, Csp6I, RsaI 364 344 137 79 76
        TGCA CviRI, HpyCH4V 842 158
        GTNNAC Hpy8I 492 328 103 77
        AATT Sse9I, TasI, Tsp509I, TspEI 167 164 108 108 105 85 66 64 61 43 15 9 5
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 236 167 164 122 90 76 66 41 23 15
        GTAC AfaI, Csp6I, RsaI 364 344 137 79 62 14
        TGCA CviRI, HpyCH4V 508 334 158
        GTNNAC Hpy8I 492 328 103 61 16
        AATT Sse9I, TasI, Tsp509I, TspEI 167 164 108 108 90 85 66 61 43 41 23 15 15 9 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031034
    Transcript: CBG09456.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        Intron_number: 1/15
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP