WormBase Tree Display for Variation: WBVar00014774
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| WBVar00014774 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00014774 | ||||
| Other_name | cbs13580 | |||||
| cb13580 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIV:g.6484826T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2220b | ||
| Flanking_sequences | acattgaattgattcatcatttcaa | accactttctctccctctctgtacg | ||||
| Mapping_target | cb25.fpc2220b | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCANNNNNTGG | AccB7I, PflBI, PflMI, Van91I | 1000 | ||
| RAATTY | AcsI, ApoI, XapI | 385 167 105 76 73 66 64 64 | ||||
| GTAC | AfaI, Csp6I, RsaI | 364 298 137 122 79 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 1000 | ||||
| CCANNNNNNTGG | BstXI | 823 177 | ||||
| TGCA | CviRI, HpyCH4V | 1000 | ||||
| GTNNAC | Hpy8I | 373 328 185 114 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 257 167 105 85 73 66 64 64 61 43 15 | ||||
| Polymorphic_strain_digest | CCANNNNNTGG | AccB7I, PflBI, PflMI, Van91I | 824 176 | |||
| RAATTY | AcsI, ApoI, XapI | 385 167 90 76 73 66 64 41 23 15 | ||||
| GTAC | AfaI, Csp6I, RsaI | 364 284 137 122 79 14 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 824 176 | ||||
| CCANNNNNNTGG | BstXI | 1000 | ||||
| TGCA | CviRI, HpyCH4V | 556 444 | ||||
| GTNNAC | Hpy8I | 373 328 169 114 16 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 257 167 90 85 73 66 64 61 43 41 23 15 15 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031034 | ||||
| Transcript | CBG09456.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG09456.1:c.-24+1767A>T | |||||
| Intron_number | 1/15 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
