WormBase Tree Display for Variation: WBVar00017541
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| WBVar00017541 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00017541 | |||
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_V:g.4500094A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T28F12 | |
| Flanking_sequences | cgatggcgcagagggtacttcttcttcttcttctccttcattccgtttcccctctgcttcttctgactttgacatgataccagaaagagcgccatccctttttccttttctcctctataatttatcgttgtgttgggtggtggctcgagctcattcttgggtttccaatcagccattgcgccccccaccgcgccgtcgctgtcgcttttttcccgctttctagatctcaaaattgcaatttttaggtgttcgccttgttttaagcgctggttagttacaatatagtttcccaagcttcag | atatagaaaaacttgaccccaaatacctcgaaaagtcgtatctctgctcatctctagaaaatcagtgaatataatactttaaaactatagttctagaaaaaacaaatattttgtcagcttagaactttttgttttaactgaaaattacaatgagctgccaaattgaagctacggtctgcaagactaacagttgcaccccatcgtccaactttgacagcttatatctcagttttcgttcatcctatataaaaattgtcaactggcaaaatccgtattatttctttttctataattttgtag | |||
| Mapping_target | T28F12 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (42) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00208309 | |||
| WBVar01274808 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006796 | |||
| Transcript | T28F12.2e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2e.1:c.12+287A>G | ||||
| Intron_number | 1/9 | ||||
| T28F12.2d.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2d.4:c.-1225+287A>G | ||||
| Intron_number | 1/11 | ||||
| T28F12.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2d.1:c.-1224-1125A>G | ||||
| Intron_number | 1/11 | ||||
| T28F12.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2a.1:c.124-1125A>G | ||||
| Intron_number | 2/11 | ||||
| T28F12.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2b.1:c.12+287A>G | ||||
| Intron_number | 2/11 | ||||
| T28F12.2d.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2d.2:c.-1242-1125A>G | ||||
| Intron_number | 1/11 | ||||
| T28F12.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2c.1:c.-1806-1125A>G | ||||
| Intron_number | 1/10 | ||||
| T28F12.2d.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2d.3:c.-1243+287A>G | ||||
| Intron_number | 1/11 | ||||
| T28F12.2c.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2c.2:c.-1423+287A>G | ||||
| Intron_number | 1/10 | ||||
| T28F12.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28F12.2f.1:c.124-1125A>G | ||||
| Intron_number | 2/10 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
