WormBase Tree Display for Variation: WBVar00020485
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| WBVar00020485 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00020485 | |||
| Other_name | haw85195 | ||||
| haw171658 | |||||
| cewivar00245468 | |||||
| CE31888:p.Cys257= | |||||
| CE40917:p.Cys223= | |||||
| C29F3.7a.1:c.771C>T | |||||
| C29F3.7b.1:c.669C>T | |||||
| HGVSg | CHROMOSOME_V:g.15356063C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C29F3 | |
| Flanking_sequences | actatgaaaatacaaaatctatttg | aaattcgagtggattttgtgtccag | |||
| Mapping_target | C29F3 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00591523 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00007807 | |||
| Transcript | C29F3.7a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C29F3.7a.1:c.771C>T | ||||
| HGVSp | CE31888:p.Cys257= | ||||
| cDNA_position | 886 | ||||
| CDS_position | 771 | ||||
| Protein_position | 257 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| C29F3.7b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C29F3.7b.1:c.669C>T | ||||
| HGVSp | CE40917:p.Cys223= | ||||
| cDNA_position | 669 | ||||
| CDS_position | 669 | ||||
| Protein_position | 223 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw85195 | ||||
| Method | WGS_Hawaiian_Waterston |
