WormBase Tree Display for Variation: WBVar00026294
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| WBVar00026294 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00026294 | ||||
| Other_name | cbs22780 | |||||
| cb22780 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | tcacaatttttaatggtctcttccg | tccacatgtctaacttactaactgc | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | G | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 357 237 127 103 76 50 18 17 8 7 | ||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 497 356 119 28 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 497 356 119 28 | ||||
| WCCGGW | BetI, BsaWI | 501 499 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 500 500 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 479 247 91 59 53 38 24 9 | ||||
| CAC | HindI | 190 95 91 72 66 40 39 35 35 33 33 32 27 27 27 24 23 21 19 17 14 12 9 7 3 3 2 2 2 | ||||
| GTNNAC | Hpy8I | 497 495 8 | ||||
| TTAA | MseI, Tru1I, Tru9I | 513 437 50 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 188 127 116 103 93 71 66 53 35 34 32 18 17 16 10 8 7 6 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 338 254 127 103 76 50 19 18 8 7 | |||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 853 119 28 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 853 119 28 | ||||
| WCCGGW | BetI, BsaWI | 1000 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 479 300 91 59 38 24 9 | ||||
| CAC | HindI | 190 95 93 91 72 40 39 35 35 33 33 32 27 27 24 23 21 19 17 14 12 9 7 3 3 2 2 2 | ||||
| GTNNAC | Hpy8I | 992 8 | ||||
| TTAA | MseI, Tru1I, Tru9I | 437 336 177 50 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 169 127 116 110 103 71 66 53 35 34 32 19 18 16 10 8 7 6 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
