WormBase Tree Display for Variation: WBVar00026309
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| WBVar00026309 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00026309 | ||||
| Other_name | cbs22783 | |||||
| cb22783 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | agccagaatagaatgctttcaaaat | ttttgtttcgagaaattctgtgaat | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 432 237 127 76 50 28 18 17 8 7 | ||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 572 356 44 28 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 572 356 44 28 | ||||
| WCCGGW | BetI, BsaWI | 574 426 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 575 425 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 479 247 166 53 31 24 | ||||
| CAC | HindI | 190 95 91 68 66 40 35 35 33 33 32 32 27 27 27 24 21 20 19 17 14 14 12 9 7 3 3 2 2 2 | ||||
| GTNNAC | Hpy8I | 572 428 | ||||
| TTAA | MseI, Tru1I, Tru9I | 574 362 50 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 191 188 127 93 71 66 53 35 34 32 28 18 17 16 10 8 7 6 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 413 254 127 76 50 28 19 18 8 7 | |||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 928 44 28 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 928 44 28 | ||||
| WCCGGW | BetI, BsaWI | 1000 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 479 300 166 31 24 | ||||
| CAC | HindI | 190 95 93 91 68 40 35 35 33 33 32 32 27 27 24 21 20 19 17 14 14 12 9 7 3 3 2 2 2 | ||||
| GTNNAC | Hpy8I | 1000 | ||||
| TTAA | MseI, Tru1I, Tru9I | 397 362 177 50 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 191 169 127 110 71 66 53 35 34 32 28 19 18 16 10 8 7 6 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
