WormBase Tree Display for Variation: WBVar00030899
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| WBVar00030899 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00030899 | ||||
| Other_name | cbs25391 | |||||
| cb25391 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | taatttataaagccgaaaattgcttttcctgaaaaatcgatttttcaattttttttccagaatttttccatatttcccgaacgaacaattctccagaagtgctcgacacgtgtcacccatcgtcgtcagcttatcggcgactagaccaacgagccgggcatgcgcagcttcgtcgatgctcgtaaaatgcaaattgtcgacaatacggcttatcgaatcgcgtaaattctagaaaattcgaatttttcgaccctaaaaacgggtttttcggcaaaaactcacatgtaaaactgcattttccggtgtcatcgtgcgcaagtaacttctgaaaaaaaatcgaaaatcattgcaaaatacagtagttgcagttctcgctgcgg | acattgctacaaaacgcggcatgcgcctttaaacggactactgtaggtgaattttttgcagatgttttgttttttttgtcgttttcggcctatttccacctatttccgtagatttttttgcaaaaaagagagaaaagttgaaaaagaagatgtttattgatgtctgggtgcagtgcggaccattccgaaacaagcaaagtgctcaaatagacaaaaaagaatacaattttcgaaaatcaaagaaacggaaaacacctagaaaaccccatgaaaaactaaagaaacaagaagattaacatacagaaatctggaaaaaagtgagtaaattttaacacagctttttgggaggcactgggagatgagaaacaatagaaaatgggaaaaatattctaaagactacaagaaagatatgaaaaagcgatgagtcatctgggaacaaaaaatcgaaaattctagaaatttccaacaaaaacaaggaaaatcaataatt | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 275 190 164 144 124 43 16 12 10 9 7 6 | ||
| GTAC | AfaI, Csp6I, RsaI | 500 500 | ||||
| RGCY | CviJI, CviTI | 261 249 163 127 117 41 24 14 4 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 274 214 157 90 70 66 55 25 24 16 9 | ||||
| GTNAC | MaeIII | 563 230 207 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 190 175 164 144 124 100 43 16 12 10 9 7 6 | |||
| GTAC | AfaI, Csp6I, RsaI | 1000 | ||||
| RGCY | CviJI, CviTI | 261 249 127 117 104 59 41 24 14 4 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 247 214 157 90 70 66 55 27 25 24 16 9 | ||||
| GTNAC | MaeIII | 495 230 207 68 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
