WormBase Tree Display for Variation: WBVar00030919
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| WBVar00030919 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00030919 | ||||
| Other_name | cbs25396 | |||||
| cb25396 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4838683A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | taatttataaagccgaaaattgcttttcctgaaaaatcgatttttcaattttttttccagaatttttccatatttcccgaacgaacaattctccagaagtgctcgacacgtgtcacccatcgtcgtcagcttatcggcgactagaccaacgagccgggcatgcgcagcttcgtcgatgctcgtaaaatgcaaattgtcgacaatacggcttatcgaatcgcgtaaattctagaaaattcgaatttttcgaccctaaaaacgggtttttcggcaaaaactcacatgtaaaactgcattttccggtgtcatcgtgcgcaagtaacttctgaaaaaaaatcgaaaatcattgcaaaatacagtagttgcagttctcgctgcggtacattgctacaaaacgcggcatgcgcctttaaacggactactgtaggtgaattttttgcagatgttttgttttttttgtcgttttcggcctatttccacctatttccgtagatttttttgcaaaaaagagagaaaagttgaaaaagaagatgtttattgatgtctgggtgcagtgcggaccattccgaaacaagcaaagtgctc | aatagacaaaaaagaatacaattttcgaaaatcaaagaaacggaaaacacctagaaaaccccatgaaaaactaaagaaacaagaagattaacatacagaaatctggaaaaaagtgagtaaattttaacacagctttttgggaggcactgggagatgagaaacaatagaaaatgggaaaaatattctaaagactacaagaaagatatgaaaaagcgatgagtcatctgggaacaaaaaatcgaaaattctagaaatttccaacaaaaacaaggaaaatcaataatt | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 275 190 148 138 124 51 49 10 9 6 | ||
| GTAC | AfaI, Csp6I, RsaI | 515 295 190 | ||||
| RGCY | CviJI, CviTI | 276 261 249 63 43 41 29 24 14 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 274 214 165 90 70 61 25 24 19 18 16 15 9 | ||||
| GTNAC | MaeIII | 768 207 25 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 190 175 148 138 124 100 51 49 10 9 6 | |||
| GTAC | AfaI, Csp6I, RsaI | 810 190 | ||||
| RGCY | CviJI, CviTI | 261 249 217 63 59 43 41 29 24 14 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 247 214 165 90 70 61 27 25 24 19 18 16 15 9 | ||||
| GTNAC | MaeIII | 700 207 68 25 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026966 | ||||
| Transcript | CBG04253a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253a.1:c.*285T>C | |||||
| cDNA_position | 6348 | |||||
| Exon_number | 23/23 | |||||
| CBG04253b.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253b.1:c.*285T>C | |||||
| cDNA_position | 6369 | |||||
| Exon_number | 23/23 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
