WormBase Tree Display for Variation: WBVar00031004
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| WBVar00031004 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00031004 | ||||
| Other_name | cbs25424 | |||||
| cb25424 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4850313A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | ggatcattttagtagatattagacc | attccagtcaattttggaccatttt | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 764 179 57 | ||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 516 484 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 516 484 | ||||
| CTAG | BfaI, MaeI, XspI | 588 412 | ||||
| CAC | HindI | 330 202 185 80 72 47 30 16 16 15 4 3 | ||||
| GANTC | HinfI | 393 345 200 34 24 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 203 172 99 86 84 53 53 42 42 38 34 30 28 20 10 6 | ||||
| GAWTC | TfiI | 393 345 200 34 24 4 | ||||
| Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 490 274 179 57 | |||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 1000 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 1000 | ||||
| CTAG | BfaI, MaeI, XspI | 1000 | ||||
| CAC | HindI | 330 202 111 80 74 72 47 30 16 16 15 4 3 | ||||
| GANTC | HinfI | 393 345 127 73 34 24 4 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 203 172 99 86 84 63 53 42 42 38 34 30 28 20 6 | ||||
| GAWTC | TfiI | 393 345 127 73 34 24 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026966 | ||||
| Transcript | CBG04253a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253a.1:c.2430-37T>C | |||||
| Intron_number | 12/22 | |||||
| CBG04253b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253b.1:c.2430-37T>C | |||||
| Intron_number | 12/22 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
