WormBase Tree Display for Variation: WBVar00031084
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| WBVar00031084 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00031084 | ||||
| Other_name | cbs25440 | |||||
| cb25440 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4853328C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | ataattcccgaattttgaatatgtt | agcatcttcaggattttccagaatc | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 167 158 99 50 46 42 35 34 33 32 32 28 24 24 22 20 17 16 15 11 9 9 8 8 8 8 8 7 7 7 7 7 2 | ||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 505 495 | ||||
| CTNAG | BstDEI, DdeI | 714 141 75 54 16 | ||||
| GAATTC | EcoRI, FunII | 651 349 | ||||
| TTAA | MseI, Tru1I, Tru9I | 228 200 199 194 164 15 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 153 130 50 47 46 43 42 34 33 32 32 28 27 24 22 20 16 16 16 15 14 12 11 9 9 9 9 8 8 8 8 8 8 8 8 7 7 7 7 7 2 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 167 158 99 46 42 41 40 35 34 32 28 24 24 22 20 17 16 16 16 15 11 9 9 9 8 8 8 8 8 7 7 7 7 2 | |||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 698 141 75 54 16 16 | ||||
| GAATTC | EcoRI, FunII | 420 349 231 | ||||
| TTAA | MseI, Tru1I, Tru9I | 422 200 199 164 15 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 153 130 47 46 43 42 41 40 34 32 28 27 24 22 20 16 16 16 16 16 15 14 12 11 9 9 9 9 9 8 8 8 8 8 8 8 8 7 7 7 7 2 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026966 | ||||
| Transcript | CBG04253a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253a.1:c.1182+36G>A | |||||
| Intron_number | 7/22 | |||||
| CBG04253b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253b.1:c.1182+36G>A | |||||
| Intron_number | 7/22 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
