WormBase Tree Display for Variation: WBVar00031109
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| WBVar00031109 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00031109 | ||||
| Other_name | cbs25446 | |||||
| cb25446 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4859488A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | atttcagttcaaatctagaatcact | aaactggaaggctatcaggacgagt | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 210 184 142 83 80 59 44 35 34 25 17 15 15 10 10 9 8 8 7 5 | ||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 585 356 59 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 577 329 58 28 8 | ||||
| CAC | HindI | 222 198 153 96 67 43 36 33 33 32 24 24 17 15 5 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 119 96 88 81 68 59 53 44 34 33 28 27 24 23 21 17 15 15 15 15 15 12 10 10 10 9 9 8 8 8 8 7 6 5 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 210 184 142 83 80 59 44 35 34 18 17 15 15 10 10 9 8 8 7 7 5 | |||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 464 356 105 59 16 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 464 329 105 58 28 8 8 | ||||
| CAC | HindI | 198 153 150 96 72 67 43 36 33 33 32 24 24 17 15 5 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 119 96 88 81 68 59 53 44 34 33 28 27 24 23 21 17 15 15 15 15 12 10 10 10 9 9 8 8 8 8 8 7 7 6 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026966 | ||||
| WBGene00026969 | ||||||
| Transcript | CBG04253a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253a.1:c.456+1945T>C | |||||
| Intron_number | 4/22 | |||||
| CBG04253b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253b.1:c.456+1945T>C | |||||
| Intron_number | 4/22 | |||||
| CBG04256.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG04256.1:c.228A>G | |||||
| HGVSp | CBP06701.1:p.Leu76%3D | |||||
| cDNA_position | 250 | |||||
| CDS_position | 228 | |||||
| Protein_position | 76 | |||||
| Exon_number | 4/6 | |||||
| Codon_change | ctA/ctG | |||||
| Amino_acid_change | L | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
