WormBase Tree Display for Variation: WBVar00031144

WBVar00031144 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00031144
    Other_name: cbs25453
      cb25453 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.4860072G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: tcaaaaatttcgaaaaatccaaaat ttcagaaatttcgaaaaattaaaac
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 102 85 83 80 53 44 38 35 34 34 34 27 26 25 22 19 19 18 17 17 17 15 15 10 10 10 9 9 9 8 8 8 8 8 8 8 7 7 7 7
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 357 272 127 84 59 58 27 16
        TCGA EsaBC3I, TaqI, TthHB8I 350 153 127 84 59 41 34 34 27 26 17 16 15 9 8
        CAC HindI 367 222 113 98 76 63 27 26 6 2
        TCNNGA Hpy178III, Hpy188III 336 314 263 87
        TCNGA Hpy188I 217 167 138 132 83 71 33 26 26 25 24 24 17 9 8
        CAYNNNNRTG MslI, SmiMI 168
        AATT Sse9I, TasI, Tsp509I, TspEI 102 85 53 44 38 34 34 28 27 27 26 25 24 22 21 19 19 18 17 17 17 17 15 15 15 15 15 12 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 7 7 6
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 102 85 83 80 55 53 44 38 35 34 34 34 26 19 19 18 17 17 17 17 15 10 10 10 10 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 272 236 127 105 84 59 58 27 16 16
        TCGA EsaBC3I, TaqI, TthHB8I 237 153 127 105 84 59 43 41 34 27 26 17 16 15 8 8
        CAC HindI 367 150 113 98 76 72 63 27 26 6 2
        TCNNGA Hpy178III, Hpy188III 336 296 263 87 18
        TCNGA Hpy188I 238 217 138 132 116 26 26 25 24 24 17 9 8
        CAYNNNNRTG MslI, SmiMI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 102 85 55 53 44 38 34 34 28 27 26 25 24 21 19 19 17 17 17 17 17 15 15 15 12 10 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026966
      WBGene00026969
    Transcript: CBG04253a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04253a.1:c.456+1361C>A
        Intron_number: 4/22
      CBG04253b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04253b.1:c.456+1361C>A
        Intron_number: 4/22
      CBG04256.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04256.1:c.427-315G>T
        Intron_number: 4/5
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP