WormBase Tree Display for Variation: WBVar00031189

WBVar00031189 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00031189
    Other_name: cbs25471
      cb25471 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.5099803T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: cgtcaattctttgaataccataaat ctgacttccaactttgagtttttcc
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 416 371 88 76 49
        GAATTC EcoRI, FunII 951 49
        CAC HindI 249 94 78 76 73 60 58 55 54 40 39 33 30 22 15 11 11 2
        TCNNGA Hpy178III, Hpy188III 631 369
        TCNGA Hpy188I 462 314 184 40
        GTNAC MaeIII 1000
        TTAA MseI, Tru1I, Tru9I 260 256 190 107 78 35 34 23 12 5
        CAYNNNNRTG MslI, SmiMI 993 7
        GTSAC NmuCI, Tsp45I 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 255 135 132 64 63 58 48 48 43 40 30 26 19 18 12 9
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 416 371 164 49
        GAATTC EcoRI, FunII 1000
        CAC HindI 249 94 76 73 69 60 55 54 40 39 33 30 30 22 19 15 11 11 9 9 2
        TCNNGA Hpy178III, Hpy188III 500 369 131
        TCNGA Hpy188I 776 184 40
        GTNAC MaeIII 917 83
        TTAA MseI, Tru1I, Tru9I 260 256 190 78 66 41 35 34 23 12 5
        CAYNNNNRTG MslI, SmiMI 929 64 7
        GTSAC NmuCI, Tsp45I 917 83
        AATT Sse9I, TasI, Tsp509I, TspEI 255 135 132 64 63 58 58 48 48 43 30 26 19 12 9
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027010
    Transcript: CBG04307.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04307.1:c.*1633T>C
        cDNA_position: 4349
        Exon_number: 21/21
      CBG04307.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04307.2:c.*1677T>C
        cDNA_position: 3967
        Exon_number: 19/19
      CBG04307.3 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04307.3:c.*1643T>C
        cDNA_position: 3933
        Exon_number: 20/20
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP