WormBase Tree Display for Variation: WBVar00032989
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| WBVar00032989 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| WBPaper00055507 | |||||
| Name | Public_name | WBVar00032989 | |||
| Other_name | cbs26301 | ||||
| cb26301 | Paper_evidence | WBPaper00055507 | |||
| HGVSg | cb25.NA_263:g.5501C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.NA_263 | |
| Flanking_sequences | tcgcaatgttcgacgtcacccaaga | ctcgagaaaaaatacgaaatcctag | |||
| Mapping_target | cb25.NA_263 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (13) | ||||
| Polymorphic_strain_digest (13) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00042912 | |||
| Transcript | CBG24910.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | CBG24910.1:c.372C>T | ||||
| HGVSp | CBP13064.1:p.Asp124%3D | ||||
| cDNA_position | 586 | ||||
| CDS_position | 372 | ||||
| Protein_position | 124 | ||||
| Exon_number | 3/7 | ||||
| Codon_change | gaC/gaT | ||||
| Amino_acid_change | D | ||||
| Reference | WBPaper00030778 | ||||
| WBPaper00055507 | |||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
