WormBase Tree Display for Variation: WBVar00035228
expand all nodes | collapse all nodes | view schema
WBVar00035228 | Name | Public_name | WBVar00035228 | ||
---|---|---|---|---|---|
Other_name | haw38168 | ||||
haw139977 | |||||
F58B6.3b.1:c.196-737A>T | |||||
F58B6.3e.1:c.-1069+194A>T | |||||
F58B6.3a.1:c.333+194A>T | |||||
F58B6.3e.3:c.-1069+194A>T | |||||
F58B6.3e.2:c.-1069+194A>T | |||||
F58B6.3d.1:c.333+194A>T | |||||
HGVSg | CHROMOSOME_III:g.1083325A>T | ||||
Sequence_details | SMap | S_parent | Sequence | F58B6 | |
Flanking_sequences | tttcctcaaaattttgaattttgtg | ctaaaaattgcattttcagccataa | |||
Mapping_target | F58B6 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00022850 | From_analysis | WGS_De_Bono | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
History | Acquires_merge | WBVar01256169 | |||
WBVar01323558 | |||||
WBVar00559842 | |||||
WBVar01390567 | |||||
Status | Live | ||||
Affects | Gene | WBGene00305464 | |||
WBGene00003917 | |||||
Transcript | F58B6.3e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F58B6.3e.1:c.-1069+194A>T | ||||
Intron_number | 3/12 | ||||
F58B6.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F58B6.3b.1:c.196-737A>T | ||||
Intron_number | 3/11 | ||||
F58B6.10 | |||||
F58B6.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F58B6.3d.1:c.333+194A>T | ||||
Intron_number | 4/10 | ||||
F58B6.3e.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F58B6.3e.2:c.-1069+194A>T | ||||
Intron_number | 2/11 | ||||
F58B6.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F58B6.3a.1:c.333+194A>T | ||||
Intron_number | 4/12 | ||||
F58B6.3e.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F58B6.3e.3:c.-1069+194A>T | ||||
Intron_number | 1/10 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw38168 | ||||
Method | WGS_Hawaiian_Waterston |