WormBase Tree Display for Variation: WBVar00036178
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| WBVar00036178 | Name | Public_name | WBVar00036178 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_III:g.1206277C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y119D3B | |
| Flanking_sequences | ccaaaattcatgaaaaacatggagc | taactgaaaattcgcgaaaaatgac | |||
| Mapping_target | Y119D3B | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01390885 | |||
| WBVar00560000 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022489 | |||
| Transcript | Y119D3B.12a.5 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12a.5:c.1011+528C>T | ||||
| Intron_number | 6/9 | ||||
| Y119D3B.12b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12b.3:c.599-576C>T | ||||
| Intron_number | 5/6 | ||||
| Y119D3B.12a.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12a.4:c.1011+528C>T | ||||
| Intron_number | 6/8 | ||||
| Y119D3B.12b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12b.2:c.599-576C>T | ||||
| Intron_number | 5/7 | ||||
| Y119D3B.12a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12a.1:c.1011+528C>T | ||||
| Intron_number | 6/7 | ||||
| Y119D3B.12a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12a.2:c.1011+528C>T | ||||
| Intron_number | 6/8 | ||||
| Y119D3B.12a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12a.3:c.1011+528C>T | ||||
| Intron_number | 6/8 | ||||
| Y119D3B.12b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y119D3B.12b.1:c.599-576C>T | ||||
| Intron_number | 5/7 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw38358 | ||||
| Method | WGS_Hawaiian_Waterston |
