WormBase Tree Display for Variation: WBVar00039083
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WBVar00039083 | Name | Public_name | WBVar00039083 | ||
---|---|---|---|---|---|
Other_name | haw38939 | ||||
haw140504 | |||||
cewivar00020794 | |||||
Y82E9BR.17b.2:c.-645-230A>T | |||||
Y82E9BR.17b.1:c.-646-230A>T | |||||
Y82E9BR.17a.1:c.549-230A>T | |||||
Y82E9BR.17b.3:c.-1325A>T | |||||
HGVSg | CHROMOSOME_III:g.1452708T>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y82E9BR | |
Flanking_sequences | tattgcaattacaataaaaattttt | aatttccaaataaatcagaaaaaag | |||
Mapping_target | Y82E9BR | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (33) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01324622 | |||
WBVar01257081 | |||||
WBVar00560369 | |||||
Status | Live | ||||
Affects | Gene | WBGene00022349 | |||
WBGene00305908 | |||||
Transcript | Y82E9BR.17b.3 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.3:c.-1325A>T | ||||
cDNA_position | 154 | ||||
Exon_number | 1/9 | ||||
Y82E9BR.17a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17a.1:c.549-230A>T | ||||
Intron_number | 6/16 | ||||
Y82E9BR.33 | |||||
Y82E9BR.17b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.2:c.-645-230A>T | ||||
Intron_number | 4/14 | ||||
Y82E9BR.17b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.1:c.-646-230A>T | ||||
Intron_number | 5/15 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw38939 | ||||
Method | WGS_Hawaiian_Waterston |