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WormBase Tree Display for Variation: WBVar00039083

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Name Class

WBVar00039083NamePublic_nameWBVar00039083
Other_namehaw38939
haw140504
cewivar00020794
Y82E9BR.17b.2:c.-645-230A>T
Y82E9BR.17b.1:c.-646-230A>T
Y82E9BR.17a.1:c.549-230A>T
Y82E9BR.17b.3:c.-1325A>T
HGVSgCHROMOSOME_III:g.1452708T>A
Sequence_detailsSMapS_parentSequenceY82E9BR
Flanking_sequencestattgcaattacaataaaaatttttaatttccaaataaatcagaaaaaag
Mapping_targetY82E9BR
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (33)
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01324622
WBVar01257081
WBVar00560369
StatusLive
AffectsGeneWBGene00022349
WBGene00305908
TranscriptY82E9BR.17b.3VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY82E9BR.17b.3:c.-1325A>T
cDNA_position154
Exon_number1/9
Y82E9BR.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY82E9BR.17a.1:c.549-230A>T
Intron_number6/16
Y82E9BR.33
Y82E9BR.17b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY82E9BR.17b.2:c.-645-230A>T
Intron_number4/14
Y82E9BR.17b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY82E9BR.17b.1:c.-646-230A>T
Intron_number5/15
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw38939
MethodWGS_Hawaiian_Waterston