Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00045396

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00045396NamePublic_nameWBVar00045396
Other_namepas20676
cewivar00105787
CE52904:p.Ser887=
F59A2.6c.1:c.2661C>A
CE52837:p.Ser929=
F59A2.6a.1:c.2787C>A
F59A2.6b.1:c.2787C>A
F59A2.6d.1:c.2661C>A
CE52876:p.Ser887=
CE52864:p.Ser929=
HGVSgCHROMOSOME_III:g.3418794C>A
Sequence_detailsSMapS_parentSequenceCHROMOSOME_III
Flanking_sequencestcgactccagaaagtgcacaacgctgggcaggaggatattcagaagctgcagaagacgtgggagttagagatggcaaagatcgcgaaaagtacagaagatgagaagttggctcgtgagcagttagctggagagctggaaaatgccaaggaagatctgaaagttgtggaagaggagaaacacactggaattcaaagggctcagggagctctcgatgatgcggagaaagaagttaaagtgctcaaagagcagctggaaagagctcaatctgcactagaatcatcccaagagctggcatcttccagaaggcagataaaatccaggagctagaaaaagagcttcaaaatgctcagaaaaggtcatcggaagagcttgaaactgcgaacgagatggttagatctttgactgcaacgctggaaaattcgaattcagagacggaaattctcaagcagaagctggaaactttggacaaagagttacaggctcggcagcaaactgaaaaagctttgactgaagaggtatatcctgaaaaaatcgaggaaaataatgaaatatgaccgaaaaattcgactttcacacaaaaatcgccttctaccaatcag
Mapping_targetCHROMOSOME_III
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000034From_analysisMillion_mutation_project_reanalysis
WBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004604From_analysisWGS_Pasadena_Quinlan
PersonWBPerson6900
AnalysisWGS_Pasadena_Quinlan
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00010306
TranscriptF59A2.6a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF59A2.6a.1:c.2787C>A
HGVSpCE52837:p.Ser929=
cDNA_position2793
CDS_position2787
Protein_position929
Exon_number11/20
Codon_changetcC/tcA
Amino_acid_changeS
F59A2.6c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF59A2.6c.1:c.2661C>A
HGVSpCE52876:p.Ser887=
cDNA_position2667
CDS_position2661
Protein_position887
Exon_number10/19
Codon_changetcC/tcA
Amino_acid_changeS
F59A2.6b.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF59A2.6b.1:c.2787C>A
HGVSpCE52864:p.Ser929=
cDNA_position2787
CDS_position2787
Protein_position929
Exon_number10/18
Codon_changetcC/tcA
Amino_acid_changeS
F59A2.6d.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF59A2.6d.1:c.2661C>A
HGVSpCE52904:p.Ser887=
cDNA_position2669
CDS_position2661
Protein_position887
Exon_number10/18
Codon_changetcC/tcA
Amino_acid_changeS
MethodWGS_Pasadena_Quinlan