WormBase Tree Display for Variation: WBVar00045396
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WBVar00045396 | Name | Public_name | WBVar00045396 | ||
---|---|---|---|---|---|
Other_name | pas20676 | ||||
cewivar00105787 | |||||
CE52904:p.Ser887= | |||||
F59A2.6c.1:c.2661C>A | |||||
CE52837:p.Ser929= | |||||
F59A2.6a.1:c.2787C>A | |||||
F59A2.6b.1:c.2787C>A | |||||
F59A2.6d.1:c.2661C>A | |||||
CE52876:p.Ser887= | |||||
CE52864:p.Ser929= | |||||
HGVSg | CHROMOSOME_III:g.3418794C>A | ||||
Sequence_details | SMap | S_parent | Sequence | CHROMOSOME_III | |
Flanking_sequences | tcgactccagaaagtgcacaacgctgggcaggaggatattcagaagctgcagaagacgtgggagttagagatggcaaagatcgcgaaaagtacagaagatgagaagttggctcgtgagcagttagctggagagctggaaaatgccaaggaagatctgaaagttgtggaagaggagaaacacactggaattcaaagggctcagggagctctcgatgatgcggagaaagaagttaaagtgctcaaagagcagctggaaagagctcaatctgcactagaatcatcccaagagctggcatcttc | cagaaggcagataaaatccaggagctagaaaaagagcttcaaaatgctcagaaaaggtcatcggaagagcttgaaactgcgaacgagatggttagatctttgactgcaacgctggaaaattcgaattcagagacggaaattctcaagcagaagctggaaactttggacaaagagttacaggctcggcagcaaactgaaaaagctttgactgaagaggtatatcctgaaaaaatcgaggaaaataatgaaatatgaccgaaaaattcgactttcacacaaaaatcgccttctaccaatcag | |||
Mapping_target | CHROMOSOME_III | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00010306 | |||
Transcript | F59A2.6a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F59A2.6a.1:c.2787C>A | ||||
HGVSp | CE52837:p.Ser929= | ||||
cDNA_position | 2793 | ||||
CDS_position | 2787 | ||||
Protein_position | 929 | ||||
Exon_number | 11/20 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
F59A2.6c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F59A2.6c.1:c.2661C>A | ||||
HGVSp | CE52876:p.Ser887= | ||||
cDNA_position | 2667 | ||||
CDS_position | 2661 | ||||
Protein_position | 887 | ||||
Exon_number | 10/19 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
F59A2.6b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F59A2.6b.1:c.2787C>A | ||||
HGVSp | CE52864:p.Ser929= | ||||
cDNA_position | 2787 | ||||
CDS_position | 2787 | ||||
Protein_position | 929 | ||||
Exon_number | 10/18 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
F59A2.6d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F59A2.6d.1:c.2661C>A | ||||
HGVSp | CE52904:p.Ser887= | ||||
cDNA_position | 2669 | ||||
CDS_position | 2661 | ||||
Protein_position | 887 | ||||
Exon_number | 10/18 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
Method | WGS_Pasadena_Quinlan |