WormBase Tree Display for Variation: WBVar00051238

WBVar00051238 Name: Public_name: WBVar00051238
    Other_name: pas2573
      haw41370
      haw142109
      cewivar00104076
      CE47330:p.Tyr226=
      Y71H2AM.5.2:c.-4-28162G>A
      Y71H2AM.16.1:c.678C>T
    HGVSg: CHROMOSOME_III:g.2758038G>A
  Sequence_details: SMap: S_parent: Sequence: Y71H2AM
    Flanking_sequences: tgtcttttgtaatctgccccaaaag tatcccgttcgcattttggacttct
    Mapping_target: Y71H2AM
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (26)
    Laboratory: RW
      AX
    Person: WBPerson1562
      WBPerson6900
      WBPerson4037
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
      WGS_Pasadena_Quinlan
    History: Acquires_merge: WBVar00561974
        WBVar01260270
        WBVar01328744
        WBVar00097714
    Status: Live
  Affects: Gene: WBGene00022170
      WBGene00022181
    Transcript: Y71H2AM.5.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y71H2AM.5.2:c.-4-28162G>A
        Intron_number: 1/5
      Y71H2AM.16.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71H2AM.16.1:c.678C>T
        HGVSp: CE47330:p.Tyr226=
        cDNA_position: 741
        CDS_position: 678
        Protein_position: 226
        Exon_number: 4/6
        Codon_change: taC/taT
        Amino_acid_change: Y
  Reference: WBPaper00038208
    WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw41370
  Method: WGS_Hawaiian_Waterston