WormBase Tree Display for Variation: WBVar00052968

WBVar00052968 Evidence: Paper_evidence: WBPaper00038208
  Name: Public_name: WBVar00052968
    Other_name: haw41716
      haw142338
      cewivar00195735
      Y55D5A.5a.1:c.2376-39C>T
      Y55D5A.5e.1:c.2148-39C>T
      Y55D5A.5d.1:c.2235-39C>T
      Y55D5A.5c.1:c.2376-39C>T
    HGVSg: CHROMOSOME_III:g.3010562G>A
  Sequence_details: SMap: S_parent: Sequence: Y55D5A
    Flanking_sequences: aatgtgatgtaatgcatagttttag ttaatttgaaaattttgaagaagag
    Mapping_target: Y55D5A
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: WGS_Hawaiian_Waterston
          WGS_Yanai
          Million_mutation_project_reanalysis
    Laboratory: RW
    Person: WBPerson1562
      WBPerson4037
    Analysis: WGS_Hawaiian_Waterston
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar00562203
    Status: Live
  Affects: Gene: WBGene00000898
    Transcript: Y55D5A.5e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5e.1:c.2148-39C>T
        Intron_number: 7/14
      Y55D5A.5a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5a.1:c.2376-39C>T
        Intron_number: 10/18
      Y55D5A.5c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5c.1:c.2376-39C>T
        Intron_number: 11/20
      Y55D5A.5d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5d.1:c.2235-39C>T
        Intron_number: 8/15
  Reference: WBPaper00038208
  Remark: [20081124 db] this Variation was previously named hw41716
  Method: WGS_Hawaiian_Waterston