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WormBase Tree Display for Variation: WBVar00054185

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Name Class

WBVar00054185EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00054185
Other_namehaw91935
haw176373
cewivar00259710
CE46529:p.Ser159=
CE38123:p.Ser159=
Y59A8B.23b.1:c.6C>A
CE43021:p.Ser2=
Y59A8B.23c.1:c.477C>A
Y59A8B.23a.1:c.477C>A
HGVSgCHROMOSOME_V:g.17963633G>T
Sequence_detailsSMapS_parentSequenceY59A8B
Flanking_sequencestaacaacattcggatgattacactggacattgcctgaatctcatgactta
Mapping_targetY59A8B
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (17)
LaboratoryRW
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00596238
StatusLive
AffectsGeneWBGene00013355
TranscriptY59A8B.23c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY59A8B.23c.1:c.477C>A
HGVSpCE46529:p.Ser159=
cDNA_position561
CDS_position477
Protein_position159
Exon_number4/8
Codon_changetcC/tcA
Amino_acid_changeS
Y59A8B.23b.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY59A8B.23b.1:c.6C>A
HGVSpCE43021:p.Ser2=
cDNA_position6
CDS_position6
Protein_position2
Exon_number1/6
Codon_changetcC/tcA
Amino_acid_changeS
Y59A8B.23a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY59A8B.23a.1:c.477C>A
HGVSpCE38123:p.Ser159=
cDNA_position477
CDS_position477
Protein_position159
Exon_number3/9
Codon_changetcC/tcA
Amino_acid_changeS
ReferenceWBPaper00038208
Remark[20081124 db] this Variation was previously named hw91935
MethodWGS_Hawaiian_Waterston