WormBase Tree Display for Variation: WBVar00054388
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WBVar00054388 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00054388 | |||
Other_name | haw42000 | ||||
haw142528 | |||||
cewivar00195923 | |||||
R148.5a.1:c.150-53T>A | |||||
R148.5b.1:c.150-53T>A | |||||
R148.5a.2:c.150-53T>A | |||||
HGVSg | CHROMOSOME_III:g.3166884T>A | ||||
Sequence_details | SMap | S_parent | Sequence | R148 | |
Flanking_sequences | atgatggggcttaattaaaagctat | tttaagctgaattcaaaaatgttat | |||
Mapping_target | R148 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (15) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00562393 | |||
Status | Live | ||||
Affects | Gene | WBGene00020104 | |||
Transcript | R148.5b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R148.5b.1:c.150-53T>A | ||||
Intron_number | 1/4 | ||||
R148.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R148.5a.1:c.150-53T>A | ||||
Intron_number | 1/6 | ||||
R148.5a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R148.5a.2:c.150-53T>A | ||||
Intron_number | 2/7 | ||||
Reference | WBPaper00038208 | ||||
Remark | [20081124 db] this Variation was previously named hw42000 | ||||
Method | WGS_Hawaiian_Waterston |