WormBase Tree Display for Variation: WBVar00056678
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| WBVar00056678 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00056678 | |||
| Other_name | haw92434 | ||||
| haw176700 | |||||
| cewivar00260592 | |||||
| R10E8.1a.6:c.-54+504A>T | |||||
| R10E8.1a.5:c.-54+504A>T | |||||
| R10E8.1a.4:c.-54+504A>T | |||||
| R10E8.1a.3:c.-54+504A>T | |||||
| R10E8.1a.2:c.-53-3161A>T | |||||
| R10E8.4:n.128T>A | |||||
| HGVSg | CHROMOSOME_V:g.18246935T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R10E8 | |
| Flanking_sequences | cacgactgtcgcattttgtttgact | tgtcgtttttcgaaacggagaccta | |||
| Mapping_target | R10E8 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00596565 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00011210 | |||
| WBGene00011207 | |||||
| Transcript | R10E8.1a.6 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R10E8.1a.6:c.-54+504A>T | ||||
| Intron_number | 1/6 | ||||
| R10E8.1a.5 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R10E8.1a.5:c.-54+504A>T | ||||
| Intron_number | 3/8 | ||||
| R10E8.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R10E8.1a.2:c.-53-3161A>T | ||||
| Intron_number | 2/7 | ||||
| R10E8.1a.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R10E8.1a.4:c.-54+504A>T | ||||
| Intron_number | 4/9 | ||||
| R10E8.1a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R10E8.1a.3:c.-54+504A>T | ||||
| Intron_number | 4/9 | ||||
| Pseudogene | R10E8.4 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R10E8.4:n.128T>A | ||||
| cDNA_position | 128 | ||||
| Exon_number | 1/5 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw92434 | ||||
| Method | WGS_Hawaiian_Waterston |
