WormBase Tree Display for Variation: WBVar00057739

WBVar00057739 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00057739
    Other_name: cbs39481
      cb39481 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.546529G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: aaattggctgaaaatgacgaaaaat aggaatttagagtcaaaaaaactat
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AATT Sse9I, TasI, Tsp509I, TspEI 195 100 89 65 45 33 32 28 26 25 24 23 21 17 17 17 17 17 16 14 12 11 10 10 10 10 10 10 9 9 9 9 9 9 8 8 8 7 7 4
      Polymorphic_strain_digest: AATT Sse9I, TasI, Tsp509I, TspEI 195 100 89 65 45 33 32 26 25 24 23 21 21 17 17 17 17 17 16 14 12 11 10 10 10 10 10 10 9 9 9 9 9 9 8 8 8 7 7 7 4
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024248
    Transcript: CBG00943a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00943a.1:c.444-54C>A
        Intron_number: 3/9
      CBG00943b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00943b.1:c.294-54C>A
        Intron_number: 3/9
      CBG00943c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00943c.1:c.399-54C>A
        Intron_number: 3/9
      CBG00943d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00943d.1:c.375-54C>A
        Intron_number: 4/9
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP