WormBase Tree Display for Variation: WBVar00060722
expand all nodes | collapse all nodes | view schema
WBVar00060722 | Name | Public_name | WBVar00060722 | ||
---|---|---|---|---|---|
Other_name | uCE3-909 | ||||
haw43266 | |||||
haw143450 | |||||
cewivar00196657 | |||||
R02F2.1a.1:c.20-486T>C | |||||
R02F2.1c.1:c.20-486T>C | |||||
R02F2.1b.1:c.20-486T>C | |||||
HGVSg | CHROMOSOME_III:g.5504149T>C | ||||
Sequence_details | SMap | S_parent | Sequence | R02F2 | |
Flanking_sequences | agtttcagcagaattcgaaatacaa | ttgtctaaaaactattttacatgga | |||
Mapping_target | R02F2 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
WBStrain00005835 | From_analysis | WGS_Andersen | |||
WBStrain00006697 | From_analysis | WGS_Andersen | |||
WBStrain00022928 | From_analysis | WGS_Andersen | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WGS_Andersen | |||||
WBStrain00023150 | From_analysis | WGS_Andersen | |||
WBStrain00023180 | From_analysis | WGS_Andersen | |||
WBStrain00023211 | From_analysis | WGS_Andersen | |||
WBStrain00023279 | From_analysis | WGS_Andersen | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01445762 | |||
WBVar00563315 | |||||
WBVar00269751 | |||||
WBVar01445763 | |||||
Status | Live | ||||
Affects | Gene | WBGene00019831 | |||
Transcript | R02F2.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R02F2.1b.1:c.20-486T>C | ||||
Intron_number | 2/6 | ||||
R02F2.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R02F2.1c.1:c.20-486T>C | ||||
Intron_number | 2/5 | ||||
R02F2.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R02F2.1a.1:c.20-486T>C | ||||
Intron_number | 2/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00005369 | |||||
Remark | [20081124 db] this Variation was previously named hw43266 | ||||
Method | WGS_Hawaiian_Waterston |