WormBase Tree Display for Variation: WBVar00064503
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| WBVar00064503 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00064503 | ||||
| Other_name | cbs41156 | |||||
| cb41156 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | ttcaaaaatctgaaattattttttt | aaaagtttttcaagtcaagttttaa | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 462 377 99 33 23 6 | ||
| TCNNGA | Hpy178III, Hpy188III | 254 250 195 84 67 63 39 25 14 9 | ||||
| TCNGA | Hpy188I | 485 122 81 79 35 29 14 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 | ||||
| TTAA | MseI, Tru1I, Tru9I | 456 224 152 68 33 23 22 9 7 6 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 187 90 75 64 56 47 39 36 32 26 25 25 22 21 19 17 16 16 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5 2 | ||||
| Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 462 377 99 46 10 6 | |||
| TCNNGA | Hpy178III, Hpy188III | 254 250 195 84 67 49 39 25 14 14 9 | ||||
| TCNGA | Hpy188I | 485 122 93 81 35 29 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 | ||||
| TTAA | MseI, Tru1I, Tru9I | 456 180 152 68 46 44 22 10 9 7 6 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 187 90 75 64 56 47 39 36 32 26 25 25 22 19 17 16 16 13 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5 2 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
