WormBase Tree Display for Variation: WBVar00064663
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| WBVar00064663 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00064663 | ||||
| Other_name | cbs41188 | |||||
| HGVSg | chrII:g.1105037A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | ttaattgggcgcgaaattcaaaatatgttcaattctcctatttgaataga | ggggaggaggggacatatcaagtgcgcaaatcttttttaattgctattta | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TGCGCA | Acc16I, AviII, FspI, MstI, NsbI | 525 475 | ||
| AACGTT | AclI, Psp1406I | 1000 | ||||
| RAATTY | AcsI, ApoI, XapI | 392 331 135 49 37 18 16 13 9 | ||||
| TTTAAA | AhaIII, DraI | 729 200 71 | ||||
| RGCY | CviJI, CviTI | 695 134 124 43 4 | ||||
| CAC | HindI | 239 145 145 135 76 51 36 27 27 26 19 17 14 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 583 398 19 | ||||
| TTAA | MseI, Tru1I, Tru9I | 450 167 142 87 71 49 34 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 204 172 132 115 105 59 49 30 28 18 16 16 13 12 9 9 9 4 | ||||
| Polymorphic_strain_digest | TGCGCA | Acc16I, AviII, FspI, MstI, NsbI | 1000 | |||
| AACGTT | AclI, Psp1406I | 705 295 | ||||
| RAATTY | AcsI, ApoI, XapI | 392 331 135 48 37 18 16 14 9 | ||||
| TTTAAA | AhaIII, DraI | 729 166 71 34 | ||||
| RGCY | CviJI, CviTI | 457 238 134 124 43 4 | ||||
| CAC | HindI | 315 145 145 135 51 36 27 27 26 19 17 14 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 602 295 103 | ||||
| TTAA | MseI, Tru1I, Tru9I | 450 167 142 136 71 34 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 204 172 160 132 105 48 30 28 18 16 16 14 14 12 9 9 9 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024188 | ||||
| Transcript | CBG00861a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00861a.1:c.529+2017A>C | |||||
| Intron_number | 6/8 | |||||
| CBG00861b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00861b.1:c.409+2017A>C | |||||
| Intron_number | 7/9 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
