WormBase Tree Display for Variation: WBVar00065018
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WBVar00065018 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00065018 | ||||
Other_name | cbs41259 | |||||
cb41259 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrII:g.941157G>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
Flanking_sequences | taaaaaatcaataaaattatcccca | acatcctcaatgtactgatccgttt | ||||
Mapping_target | cb25.fpc0022b | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 146 134 107 107 87 81 66 59 44 36 28 24 15 15 12 11 10 10 8 | ||
TTTAAA | AhaIII, DraI | 524 425 51 | ||||
GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 479 428 45 38 10 | ||||
AGATCT | BglII | 1000 | ||||
TTAA | MseI, Tru1I, Tru9I | 523 354 71 52 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 134 117 101 84 81 59 50 44 36 33 29 24 23 23 22 19 15 15 12 11 10 10 9 8 7 7 6 6 5 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 138 134 107 107 97 81 66 59 44 36 27 23 15 15 13 12 10 8 8 | |||
TTTAAA | AhaIII, DraI | 948 52 | ||||
GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 907 45 38 10 | ||||
AGATCT | BglII | 536 464 | ||||
TTAA | MseI, Tru1I, Tru9I | 594 353 53 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 134 117 101 84 81 59 50 44 36 33 29 23 23 22 21 19 16 15 15 13 12 10 9 8 8 7 6 5 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00024201 | ||||
Transcript | CBG00882.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | CBG00882.1:c.2043C>T | |||||
HGVSp | CBP00298.1:p.Val681%3D | |||||
cDNA_position | 2050 | |||||
CDS_position | 2043 | |||||
Protein_position | 681 | |||||
Exon_number | 12/13 | |||||
Codon_change | gtC/gtT | |||||
Amino_acid_change | V | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |