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WormBase Tree Display for Variation: WBVar00065018

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Name Class

WBVar00065018EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00065018
Other_namecbs41259
cb41259Paper_evidenceWBPaper00055507
HGVSgchrII:g.941157G>A
Sequence_detailsSMapS_parentSequencecb25.fpc0022b
Flanking_sequencestaaaaaatcaataaaattatccccaacatcctcaatgtactgatccgttt
Mapping_targetcb25.fpc0022b
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI146 134 107 107 87 81 66 59 44 36 28 24 15 15 12 11 10 10 8
TTTAAAAhaIII, DraI524 425 51
GAANNNNTTCAsp700I, MroXI, PdmI, XmnI479 428 45 38 10
AGATCTBglII1000
TTAAMseI, Tru1I, Tru9I523 354 71 52
AATTSse9I, TasI, Tsp509I, TspEI134 117 101 84 81 59 50 44 36 33 29 24 23 23 22 19 15 15 12 11 10 10 9 8 7 7 6 6 5
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI138 134 107 107 97 81 66 59 44 36 27 23 15 15 13 12 10 8 8
TTTAAAAhaIII, DraI948 52
GAANNNNTTCAsp700I, MroXI, PdmI, XmnI907 45 38 10
AGATCTBglII536 464
TTAAMseI, Tru1I, Tru9I594 353 53
AATTSse9I, TasI, Tsp509I, TspEI134 117 101 84 81 59 50 44 36 33 29 23 23 22 21 19 16 15 15 13 12 10 9 8 8 7 6 5
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00024201
TranscriptCBG00882.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScCBG00882.1:c.2043C>T
HGVSpCBP00298.1:p.Val681%3D
cDNA_position2050
CDS_position2043
Protein_position681
Exon_number12/13
Codon_changegtC/gtT
Amino_acid_changeV
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP