WormBase Tree Display for Variation: WBVar00065267
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WBVar00065267 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00065267 | ||||
Other_name | cbs41309 | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
Flanking_sequences | gactttaaactcaattttgcaccaaaaatttgcaaaaaaccaaaattttt | ggccgaaaaacacaagagcaaagctggaacgagaattagaaagattgcgc | ||||
Mapping_target | cb25.fpc0022b | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 275 190 113 99 55 45 43 37 31 20 20 17 10 10 10 9 8 8 | ||
TTTAAA | AhaIII, DraI | 455 297 248 | ||||
GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 500 289 211 | ||||
CAC | HindI | 165 142 132 90 85 73 51 46 42 38 31 23 22 19 12 12 7 4 2 2 2 | ||||
TTAA | MseI, Tru1I, Tru9I | 240 207 149 124 86 74 29 28 20 19 18 6 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 135 72 64 57 57 55 52 45 45 41 36 31 29 26 22 21 20 20 18 17 15 14 14 13 11 11 10 10 10 9 8 8 4 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 275 190 113 99 74 55 45 37 20 20 17 10 10 10 9 8 8 | |||
TTTAAA | AhaIII, DraI | 455 270 248 27 | ||||
GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 711 289 | ||||
CAC | HindI | 165 142 132 90 85 80 73 51 46 31 23 22 19 12 7 5 5 4 2 2 2 2 | ||||
TTAA | MseI, Tru1I, Tru9I | 240 207 149 124 86 74 30 27 20 19 18 6 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 135 72 64 57 57 55 52 47 45 45 41 36 31 26 22 21 20 20 17 15 14 14 13 11 11 10 10 10 9 8 8 4 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |