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WormBase Tree Display for Variation: WBVar00065267

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Name Class

WBVar00065267EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00065267
Other_namecbs41309
Sequence_detailsSMapS_parentSequencecb25.fpc0022b
Flanking_sequencesgactttaaactcaattttgcaccaaaaatttgcaaaaaaccaaaatttttggccgaaaaacacaagagcaaagctggaacgagaattagaaagattgcgc
Mapping_targetcb25.fpc0022b
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI275 190 113 99 55 45 43 37 31 20 20 17 10 10 10 9 8 8
TTTAAAAhaIII, DraI455 297 248
GGNCCAspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI500 289 211
CACHindI165 142 132 90 85 73 51 46 42 38 31 23 22 19 12 12 7 4 2 2 2
TTAAMseI, Tru1I, Tru9I240 207 149 124 86 74 29 28 20 19 18 6
AATTSse9I, TasI, Tsp509I, TspEI135 72 64 57 57 55 52 45 45 41 36 31 29 26 22 21 20 20 18 17 15 14 14 13 11 11 10 10 10 9 8 8 4
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI275 190 113 99 74 55 45 37 20 20 17 10 10 10 9 8 8
TTTAAAAhaIII, DraI455 270 248 27
GGNCCAspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI711 289
CACHindI165 142 132 90 85 80 73 51 46 31 23 22 19 12 7 5 5 4 2 2 2 2
TTAAMseI, Tru1I, Tru9I240 207 149 124 86 74 30 27 20 19 18 6
AATTSse9I, TasI, Tsp509I, TspEI135 72 64 57 57 55 52 47 45 45 41 36 31 26 22 21 20 20 17 15 14 14 13 11 11 10 10 10 9 8 8 4
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP