WormBase Tree Display for Variation: WBVar00065292

WBVar00065292 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00065292
    Other_name: cbs41314
      cb41314 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.644637G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: ttgagatttcaaaaaaccaaaattc aaaaaaaaatctgaaattcagaatt
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 191 137 60 50 43 32 23 22 21 20 18 17 16 16 16 16 16 16 16 16 15 15 13 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 501 325 174
        ATCGAT BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 326 274 174 113 113
        AATT Sse9I, TasI, Tsp509I, TspEI 138 63 60 53 43 41 39 26 23 22 20 20 17 16 16 16 16 16 16 16 15 15 13 13 12 11 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6 6
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 191 137 60 50 43 32 22 21 20 18 17 16 16 16 16 16 16 16 16 15 15 15 13 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 675 325
        ATCGAT BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI 747 253
        TCGA EsaBC3I, TaqI, TthHB8I 326 287 139 135 113
        AATT Sse9I, TasI, Tsp509I, TspEI 138 83 60 53 43 41 39 26 22 20 17 16 16 16 16 16 16 16 15 15 15 13 13 12 11 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024235
      WBGene00270939
    Transcript: CBG00927.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00927.1:c.*233+85G>A
        Intron_number: 7/7
      CBG29993.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG29993.1:c.157-85C>T
        Intron_number: 1/1
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP