WormBase Tree Display for Variation: WBVar00065312

WBVar00065312 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00065312
    Other_name: cbs41318
    HGVSg: chrII:g.644191C>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: aacgtcttctgaatctccagatgcctcctcgttctttctctgattttttc caattctgcctcgtaaagcgacaccttgtagtgttcccgctccattggat
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: G C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 261 137 98 94 74 50 43 32 32 28 23 22 20 15 15 13 10 9 9 8 7
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 512 435 53
        ATCGAT BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI 757 243
        TCGA EsaBC3I, TaqI, TthHB8I 274 242 192 125 113 54
        CAC HindI 357 149 88 86 75 70 49 48 28 22 10 10 6 2
        GANTC HinfI 433 385 107 48 18 9
        GTNNAC Hpy8I 553 447
        AATT Sse9I, TasI, Tsp509I, TspEI 138 88 76 74 72 63 47 43 41 39 28 26 23 23 22 22 20 20 15 15 13 13 11 10 10 9 9 9 8 7 6
        GAWTC TfiI 433 385 107 48 27
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 261 137 98 94 74 50 43 32 32 28 22 20 15 15 15 13 10 9 9 8 8 7
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 1000
        ATCGAT BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI 456 301 243
        TCGA EsaBC3I, TaqI, TthHB8I 317 242 167 139 135
        CAC HindI 357 149 110 86 75 70 49 48 28 10 10 6 2
        GANTC HinfI 540 385 48 18 9
        GTNNAC Hpy8I 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 138 88 83 76 74 72 47 43 41 39 28 26 23 22 22 20 15 15 15 13 13 11 10 10 9 9 9 8 8 7 6
        GAWTC TfiI 540 385 48 27
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024235
    Transcript: CBG00927.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG00927.1:c.598C>G
        HGVSp: CBP05855.1:p.Arg200Gly
        cDNA_position: 627
        CDS_position: 598
        Protein_position: 200
        Exon_number: 6/8
        Codon_change: Cga/Gga
        Amino_acid_change: R/G
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP