WormBase Tree Display for Variation: WBVar00065332
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| WBVar00065332 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00065332 | ||||
| Other_name | cbs41322 | |||||
| HGVSg | chrII:g.644124C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | agcgacaccttgtagtgttcccgctccattggatgtccacgatagtattc | aatcctgcaaaattgaagaaaatcagaacttttccagttttaacgtcttc | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 261 137 113 98 94 50 43 32 32 28 22 19 15 15 13 11 9 8 | ||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 502 498 | ||||
| ATCGAT | BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI | 690 310 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 309 274 192 125 100 | ||||
| CAC | HindI | 424 88 86 82 75 70 49 48 28 22 10 10 6 2 | ||||
| GANTC | HinfI | 500 318 107 48 18 9 | ||||
| GTNNAC | Hpy8I | 514 486 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 138 113 88 76 72 63 47 43 41 39 28 26 23 22 22 20 15 15 13 13 12 11 11 10 9 9 8 7 6 | ||||
| GAWTC | TfiI | 500 318 107 48 27 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 261 137 113 98 94 50 43 32 32 28 22 19 15 15 13 9 8 8 3 | |||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 1000 | ||||
| ATCGAT | BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI | 6 310 234 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 317 309 139 135 100 | ||||
| CAC | HindI | 424 110 86 82 75 70 49 48 28 10 10 6 2 | ||||
| GANTC | HinfI | 607 318 48 18 9 | ||||
| GTNNAC | Hpy8I | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 138 113 88 83 76 72 47 43 41 39 28 26 23 22 22 15 15 13 13 12 11 10 9 9 8 8 7 6 3 | ||||
| GAWTC | TfiI | 607 318 48 27 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024235 | ||||
| Transcript | CBG00927.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG00927.1:c.531C>T | |||||
| HGVSp | CBP05855.1:p.Phe177%3D | |||||
| cDNA_position | 560 | |||||
| CDS_position | 531 | |||||
| Protein_position | 177 | |||||
| Exon_number | 6/8 | |||||
| Codon_change | ttC/ttT | |||||
| Amino_acid_change | F | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
