WormBase Tree Display for Variation: WBVar00065347
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WBVar00065347 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00065347 | |||
Other_name | cbs41325 | ||||
cb41325 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrII:g.642835T>C | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | |
Flanking_sequences | tttccagatggagcatctacgataa | gtcggtcgcgacatcgacggcactc | |||
Mapping_target | cb25.fpc0022b | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | Reference_strain_digest (12) | ||||
Polymorphic_strain_digest (12) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00024235 | |||
Transcript | CBG00927.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | CBG00927.1:c.93T>C | ||||
HGVSp | CBP05855.1:p.Asn31%3D | ||||
cDNA_position | 122 | ||||
CDS_position | 93 | ||||
Protein_position | 31 | ||||
Exon_number | 3/8 | ||||
Codon_change | aaT/aaC | ||||
Amino_acid_change | N | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |