WormBase Tree Display for Variation: WBVar00065417

WBVar00065417 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00065417
    Other_name: cbs41339
      cb41339 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.642056G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: actttatctaggtcgatttagaggc ttaattccaaattttttgattagaa
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GACNNNNNNGTC AasI, DrdI, DseDI 1000
        RAATTY AcsI, ApoI, XapI 195 189 183 136 80 70 60 44 25 12 6
        ATTAAT AseI, AsnI, PshBI, VspI 1000
        CTAG BfaI, MaeI, XspI 485 321 194
        GANTC HinfI 358 350 224 68
        TCNGA Hpy188I 373 265 248 66 48
        AATT Sse9I, TasI, Tsp509I, TspEI 176 175 166 80 70 62 60 44 42 32 23 20 19 12 7 6 6
        GAWTC TfiI 358 350 224 68
      Polymorphic_strain_digest: GACNNNNNNGTC AasI, DrdI, DseDI 744 256
        RAATTY AcsI, ApoI, XapI 195 189 183 150 136 60 44 25 12 6
        ATTAAT AseI, AsnI, PshBI, VspI 504 496
        CTAG BfaI, MaeI, XspI 485 194 172 149
        GANTC HinfI 350 346 224 68 12
        TCNGA Hpy188I 373 265 248 54 48 12
        AATT Sse9I, TasI, Tsp509I, TspEI 176 175 166 150 62 60 44 42 32 23 20 19 12 7 6 6
        GAWTC TfiI 350 346 224 68 12
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024236
    Transcript: CBG00928.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00928.1:c.174-63C>T
        Intron_number: 3/22
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP