WormBase Tree Display for Variation: WBVar00065657

WBVar00065657 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00065657
    Other_name: cbs41387
      cb41387 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.448607A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: attccgaaattctgagattctgaaattctaagatt agaaattctggaaatccgaaaatct
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 784 216
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 543 386 71
        GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 786 214
        TCGA EsaBC3I, TaqI, TthHB8I 378 288 99 93 71 47 24
        GANTC HinfI 437 151 79 60 40 36 36 32 32 17 16 16 16 16 16
        TCNNGA Hpy178III, Hpy188III 192 191 132 111 96 94 62 32 32 23 14 11 10
        TCNGA Hpy188I 196 126 72 61 51 49 40 40 32 28 24 23 16 16 16 16 16 16 13 12 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8
        TTAA MseI, Tru1I, Tru9I 501 354 145
        GCSGC TauI 786 214
        GAWTC TfiI 437 151 79 60 40 36 36 32 32 17 16 16 16 16 16
      Polymorphic_strain_digest: CCGC AciI 546 238 216
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 614 386
        GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 544 242 214
        TCGA EsaBC3I, TaqI, TthHB8I 425 288 99 93 71 24
        GANTC HinfI 437 151 63 60 40 36 36 32 32 17 16 16 16 16 16 16
        TCNNGA Hpy178III, Hpy188III 287 192 132 111 94 62 32 32 23 14 11 10
        TCNGA Hpy188I 196 126 72 61 51 49 40 40 28 24 23 16 16 16 16 16 16 16 16 13 12 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8
        TTAA MseI, Tru1I, Tru9I 855 145
        GCSGC TauI 544 242 214
        GAWTC TfiI 437 151 63 60 40 36 36 32 32 17 16 16 16 16 16 16
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024262
    Transcript: CBG00958.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00958.1:c.553-203A>C
        Intron_number: 5/7
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP