WormBase Tree Display for Variation: WBVar00065702

WBVar00065702 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00065702
    Other_name: cbs41396
      cb41396 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.407186A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: ggaagtttttagaaaaaagtgctag attcggattttcaggcgtctaccta
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 218 200 178 151 77 42 41 40 27 13 12 1
        GCANNNNNTGC ApaBI, BstAPI 870 130
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 583 225 131 61
        GAATTC EcoRI, FunII 296 286 218 200
        GANTC HinfI 431 194 153 149 43 30
        TCNNGA Hpy178III, Hpy188III 295 256 159 146 144
        AATT Sse9I, TasI, Tsp509I, TspEI 218 117 110 77 74 65 61 45 42 41 40 27 25 20 13 12 12 1
        GAWTC TfiI 431 194 153 149 73
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 418 178 151 77 42 41 40 27 13 12 1
        GCANNNNNTGC ApaBI, BstAPI 839 130 31
        GCNNNNNNNGC BstMWI, HpyF10VI, MwoI 583 194 131 61 31
        GAATTC EcoRI, FunII 418 296 286
        GANTC HinfI 237 194 194 153 149 43 30
        TCNNGA Hpy178III, Hpy188III 256 227 159 146 144 68
        AATT Sse9I, TasI, Tsp509I, TspEI 243 117 110 77 74 65 61 45 42 41 40 27 20 13 12 12 1
        GAWTC TfiI 237 194 194 153 149 73
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024271
    Transcript: CBG00969.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00969.1:c.539-15A>G
        Intron_number: 4/5
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP