WormBase Tree Display for Variation: WBVar00065732

WBVar00065732 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00065732
    Other_name: cbs41402
    HGVSg: chrII:g.375406A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: cattttatcagttgacacgttcttgatatctcgcataggatcagagataa tgatctgtaactcgacactataaggaaccttctattgaagctttccaaat
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 658 342
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 840 160
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 526 474
        CAC HindI 243 150 131 84 70 58 54 51 40 37 30 27 18 7
        AATT Sse9I, TasI, Tsp509I, TspEI 205 179 103 93 91 88 61 49 44 39 31 9 8 0
      Polymorphic_strain_digest: GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 459 342 199
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 576 264 160
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 474 390 136
        CAC HindI 243 150 131 84 70 58 51 47 40 37 30 27 18 7 7
        AATT Sse9I, TasI, Tsp509I, TspEI 205 179 149 103 93 91 49 44 39 31 9 8 0
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024279
    Transcript: CBG00978.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG00978.1:c.390+56A>T
        Intron_number: 3/8
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP