WormBase Tree Display for Variation: WBVar00065922

WBVar00065922 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00065922
    Other_name: cbs41440
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: aactttctcctgtttccgtttcccctttgtcccccttattcatccaattt tacacatgtctaccgagagcaacctttgtcccgagaaacttttctcagac
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 530 298 172
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 1 95 43
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 959 41
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 505 196 134 112 44 9
        RGCY CviJI, CviTI 423 290 217 21 20 19 10
        TGCA CviRI, HpyCH4V 1000
        WGGCCW HaeI 1000
        TTAA MseI, Tru1I, Tru9I 659 266 45 30
      Polymorphic_strain_digest: CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 702 298
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 527 335 95 43
        CCNNGG BsaJI, BseDI, BssECI, SecI 961 39
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 959 34 7
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 961 39
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 490 196 134 112 44 15 9
        RGCY CviJI, CviTI 423 290 217 20 19 14 10 7
        TGCA CviRI, HpyCH4V 507 493
        WGGCCW HaeI 966 34
        TTAA MseI, Tru1I, Tru9I 328 266 182 149 45 30
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP