WormBase Tree Display for Variation: WBVar00065927

WBVar00065927 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00065927
    Other_name: cbs41441
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: ttattcatccaatttctacacatgtctaccgagagcaacctttgtcccga aaacttttctcagaccaaaactatttttgattttttgacccccaccgaat
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 495 333 172
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 366 335 161 130 8
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 924 76
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 470 196 169 112 44 9
        RGCY CviJI, CviTI 398 290 217 55 21 19
        TGCA CviRI, HpyCH4V 1000
        WGGCCW HaeI 1000
        TTAA MseI, Tru1I, Tru9I 659 231 51 45 14
      Polymorphic_strain_digest: CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 667 333
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 527 335 130 8
        CCNNGG BsaJI, BseDI, BssECI, SecI 926 74
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 924 69 7
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 926 74
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 455 196 169 112 44 15 9
        RGCY CviJI, CviTI 398 290 217 55 19 14 7
        TGCA CviRI, HpyCH4V 542 458
        WGGCCW HaeI 931 69
        TTAA MseI, Tru1I, Tru9I 328 231 182 149 51 45 14
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP